Search Cottages in San Juan Island

  • Plan, book, stay with confidence

    • bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    Sign in
    today icon
    Change your mind
    Book hotels with free cancellation

Check prices for these dates

Next weekend
Apr 4 - Apr 6
In two weeks
Apr 11 - Apr 13
In one month
Apr 25 - Apr 27
In two months
May 23 - May 25

Compare 14 Cottages in San Juan Island with updated reviews, rates, and availability.

The Little Pink House by Avantstay Water Views
Interior

The Little Pink House by Avantstay Water Views

3.0 star property
10.0 out of 10, Exceptional, (2)
"Perfect for a short weekend with family "
The Little Pink House by Avantstay Water Views
Penn Cove Overlook by Avantstay Cabin w/ Views
Interior

Penn Cove Overlook by Avantstay Cabin w/ Views

3.0 star property
10.0 out of 10, Exceptional, (1)
"Really loved how private and quiet it was. It was so cute and comfortable. Would love to go back and stay longer."
Penn Cove Overlook by Avantstay Cabin w/ Views
Oak Harbor Hideaway - 5 Mi to Deception Pass!
Outdoor dining

Oak Harbor Hideaway - 5 Mi to Deception Pass!

3.0 star property
Oak Harbor Hideaway - 5 Mi to Deception Pass!
Swan Lake Cottage by Avantstay Views + Firepit
House (2 Bedrooms) | Interior

Swan Lake Cottage by Avantstay Views + Firepit

3.0 star property
Swan Lake Cottage by Avantstay Views + Firepit
Stunning Home in Coupeville w/ Deck + Beach Access
House (2 Bedrooms) | Private kitchen | Microwave, oven, stovetop, dishwasher

Stunning Home in Coupeville w/ Deck + Beach Access

3.0 star property
10.0 out of 10, Exceptional, (3)
"Had a heck of a time figuring out the light switches in this place, but other than that, it was perfect!"
Stunning Home in Coupeville w/ Deck + Beach Access
Bayfront Home - Take Ferry to the San Juan Islands
Fireplace

Bayfront Home - Take Ferry to the San Juan Islands

3.0 star property
10.0 out of 10, Exceptional, (1)
Bayfront Home - Take Ferry to the San Juan Islands
Lopez Island Hideaway w/ Coastal Views + Deck!
House (4 Bedrooms) | Interior

Lopez Island Hideaway w/ Coastal Views + Deck!

3.0 star property
10.0 out of 10, Exceptional, (1)
"Very spacious house and great yard. Great location close to Lopez village. Will stay here again when visiting Lopez."
Lopez Island Hideaway w/ Coastal Views + Deck!
West Beach Lookout by Avantstay Walk to Beach
Exterior

West Beach Lookout by Avantstay Walk to Beach

3.0 star property
6.0 out of 10, (1)
"Run by a management company. Pet fee not listed and after we paid they told us it was more for our dog for 3 days. Asked for a refund told no we had to lose half after booking if we cancel.. ya right. Ended up coughing up additional money. Frankly kinda crappy. They now have the pet fee as super high per day on site which I'm sure is also an error since they told us way lower per day. I won't be booking an house again with the site. Once they have your money, your out of luck if extra...
West Beach Lookout by Avantstay Walk to Beach
Anacortes Paradise Vacation Rental w/ Water Views!
Interior

Anacortes Paradise Vacation Rental w/ Water Views!

3.0 star property
Anacortes Paradise Vacation Rental w/ Water Views!
Anacortes Home w/ Views of Puget Sound
House (3 Bedrooms) | Private kitchen | Microwave, oven, stovetop, dishwasher

Anacortes Home w/ Views of Puget Sound

3.0 star property
6.0 out of 10, (1)
"The house is super clean and well stocked. Great view, nice neighborhood, close to ferry and to town and state park. But, the host is not flexible and cooperative. And the bed in the master bedroom is the worst. Keeps creaking with every turn and the mattress is so hard, you may as well be sleeping on a camping mat. Keep in mind, there no ceiling fans or AC and it was HOT in August and very uncomfortable to sleep at night. "
Anacortes Home w/ Views of Puget Sound
West Beach Wonderland by Avantstay Waterfront
Interior

West Beach Wonderland by Avantstay Waterfront

3.0 star property
West Beach Wonderland by Avantstay Waterfront
Similk Bay Retreat With Deck, Fire Pit + Hot Tub!
Terrace/patio

Similk Bay Retreat With Deck, Fire Pit + Hot Tub!

3.0 star property
Similk Bay Retreat With Deck, Fire Pit + Hot Tub!
Custom Guemes Home w/ Spectacular Water Views!
House (3 Bedrooms) | Private kitchen | Microwave, oven, stovetop, dishwasher

Custom Guemes Home w/ Spectacular Water Views!

3.0 star property
Custom Guemes Home w/ Spectacular Water Views!
Coastal Haven w/ Hot Tub & San Juan Island Views
House (1 Bedroom) | Private kitchen | Microwave, oven, stovetop, blender

Coastal Haven w/ Hot Tub & San Juan Island Views

3.0 star property
Coastal Haven w/ Hot Tub & San Juan Island Views
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Don't see what you're looking for?
See all available properties in San Juan Island
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free

Other property types in San Juan Island

West Beach Resort
Traditional Cabin, 1 Bedroom, Non Smoking, Beach View (No Pets) | Beach/ocean view

West Beach Resort

3.5 star property
9.2 out of 10, Wonderful, (95)
"Best sunsets!"
The price is ₩301,716
₩333,089 total
includes taxes & fees
Mar 31 - Apr 1
West Beach Resort
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

Why book your cottage in San Juan Island with Expedia?
Expedia has some excellent cottages in San Juan Island, so get ready for a memorable vacay close to nature. If you have a set budget, select how much you’re willing to spend and the star rating of your property. Or, use our filters to search for cottages with a hot tub or free WiFi. We’ll help you find the perfect place whatever your plans or style of travel.
How can I find cheap cottages in San Juan Island?
Expedia can help you locate cheap cottages in San Juan Island. To book your dream stay in a few clicks, simply use the filter tool to refine your search by star rating, budget and amenities.